# ========= [INFO] ==========
# Mut inCB: not accepter mutation in BC
# Mut inMS: 2
# ReadIn  : /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.seq
# seq_deb : GTGATAGTC
# seq_fin : TCTCT
# MS_seq : A
# excl : C,G,T
# nom  : A20
# log  : /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A20.seq.log
# =============================
#
# condiGrep: GTGA.AGTC.+.CTCT|GTGA.AGTC.+T.TCT|GTGA.AGTC.+TC.CT|GTGA.AGTC.+TCT.T|GTGA.AGTC.+TCTC.|GTGAT.GTC.+.CTCT|GTGAT.GTC.+T.TCT|GTGAT.GTC.+TC.CT|GTGAT.GTC.+TCT.T|GTGAT.GTC.+TCTC.|GTGATA.TC.+.CTCT|GTGATA.TC.+T.TCT|GTGATA.TC.+TC.CT|GTGATA.TC.+TCT.T|GTGATA.TC.+TCTC.|GTGATAG.C.+.CTCT|GTGATAG.C.+T.TCT|GTGATAG.C.+TC.CT|GTGATAG.C.+TCT.T|GTGATAG.C.+TCTC.|GTGATAGT..+.CTCT|GTGATAGT..+T.TCT|GTGATAGT..+TC.CT|GTGATAGT..+TCT.T|GTGATAGT..+TCTC.
# condiSet1: s/^.*GTGA.AGTC//g;s/^.*GTGAT.GTC//g;s/^.*GTGATA.TC//g;s/^.*GTGATAG.C//g;s/^.*GTGATAGT.//g
# condiSet2: s/.CTCT.*$//g;s/T.TCT.*$//g;s/TC.CT.*$//g;s/TCT.T.*$//g;s/TCTC..*$//g
# Pre-filtre ExactEnd: 48744 /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A20.seq.exactEachEnd.MS
# Pre-filtre MutInEnd: 531 /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A20.seq.Max1MutEachEnd.MS
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A20.seq.MS.all ] 48585 lines.
#
#> SophieMS_GenotyperMS_unProfil.r /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A20.seq.MS.all.nb A
#> SophieMS_GenotyperMS_unProfil_v2.r /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A20.seq.exactEachEnd.MS.MS_noMut.nb /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A20.seq.exactEachEnd.MS.MS_Mut.nb /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A20.seq.Max1MutEachEnd.MS.MS_noMut.nb /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A20.seq.Max1MutEachEnd.MS.MS_Mut.nb  A  /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A20.seq.MS
# =============[ END ]===========
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A20.seq.MS.all.nb ]
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A20.seq.MS.all.profil.png ]
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A20.seq.MS.profil_v2.png ]
#
#nbRead	nbMSall	nb_EndnoMut_MSnoMut	nb_EndnoMut_MSMut	nb_EndMut_MSnoMut	nb_EndMut_MSMut
215669	48585	48404	153	17	11
